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alexm committed 2026-10-11 23:45:29 -04:00
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fixtures/records/anchor-cell.json
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{"context":{"column_path":["Set A","$K_r$ (kcal mol⁻¹ Å⁻²)"],"row_path":["Bond parameters","CT–CT"],"table_label":"Table 1"},"doc":"hale2026harmonic","format":"scienting-anchor/1","kind":"cell","node":"nkm3xn5","node_hash":"21f13b21948078f64c564334e5bb180b4495edb25a79ae32aa967986a626f3d5","own_hash":"2937e2a6f14cfebd4ffd20e3d514e5cbbf0626a5c0089b7cbea817ef20782b3d","quote":{"exact":"310.0"},"rev":12,"store":"smithlab"}
fixtures/records/anchor-keyed.json
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{"context":{"column_path_mac":["8de5d9cfdf71c50b161f357ab526bc7ffadd407c49c642a10112bb41cc4e1bc1","31824d3d0594c075074ff3a88e4c571e1f856218179a809f4f69bd5891ee7ff8"],"row_path_mac":["1db463578fc748d9686a5a1355c2a08086f4f331b546ec3273dd5e49ff1d178d","74bdccbc71693a4f8046f2e92bc477ff04fc5e04a8998e3ee189ba6b72b971e0"],"table_label_mac":"6943d614b69c7b2458c337ead13591262e932934151c27862ec0d47e4d560641"},"doc":"hale2026harmonic","format":"scienting-anchor/1","keyed":{"context":"layer:smithlab/kp4m2x7q","pages":["9dd865c7a19b44dc97a5d236859ed79174b25b72a5781d8df4f091d096de8908","1feb6882031349ca5eee822557bab0b6b0436a2d132ae8ca03babac2ff1948b8"],"scheme":"hkdf-pages"},"kind":"cell","node":"nkm3xn5","node_hash":"3cc6c2e26b027c5ed5b258c225daba349662315e3a0b3999346b61e580acdc4e","own_hash":"f7f3e9f91b3b20d5f9cd3e6704b22e5173f3464ddf2a78e7d8c80488e71a6443","quote":{"length":5,"mac":"0d8d4fcd55f1a4cfd7f254d597b7a5777b8865eb371283c03527ac8195ebb5ac"},"rev":12,"store":"smithlab"}
fixtures/records/anchor-leaf.json
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{"doc":"hale2026harmonic","format":"scienting-anchor/1","kind":"sentence","node":"sxgcc9h","node_hash":"76e06b4811a688357ac4b912172283463cfaf1b7a1f0795d274fc733a2309ba7","own_hash":"2d7df7b8b233eab6f96d5db0d29c99062aaa94b55cf4e388c49b9995ce7548d5","quote":{"exact":"The bond energy is given by $$E_{\\mathrm{bond}} = \\frac{1}{2} K_r (r - r_{\\mathrm{eq}})^2$$ where $K_r$ is the bond force constant and $r_\\mathrm{eq}$ the equilibrium bond length."},"rev":12,"store":"smithlab"}
fixtures/records/anchor-paragraph.json
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{"doc":"hale2026harmonic","format":"scienting-anchor/1","kind":"paragraph","leaves":[["mbtjsqv","83edd3a8c2b7d55b524ec0668beb74cceb3dcfb24dae5ff24e99d4c7b498e29a"],["sxgcc9h","924426976d176b8b8bb6a166c9f18d9c52225b47c1f5e17b68f0a36326f721d0"],["qn08tj9","cd2822e88bcde089a4b8d4d60820a4c0c387d75c7fb1737b5e5ac93129194ff7"],["f929eq9","1306aa85965bf549361dbb25337341ad6caa1645f52fbf8bf72378988318ab59"]],"node":"pnkah9n","node_hash":"8184d9488c57577474ada18b729f1ed2aeef72adbb1ee9206c5b342b85f4716a","own_hash":"494e069be36a18ecaabf5a63be7c31617ade7a5460218ca83a2de3d8d8f964e0","rev":12,"store":"smithlab"}
fixtures/records/anchor-span.json
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{"doc":"hale2026harmonic","format":"scienting-anchor/1","kind":"sentence","node":"f929eq9","node_hash":"cd6cdb032e9b8ab712790b7181f794f6e363b7c4c96888049b59c671c1596369","own_hash":"d5b2ebdc96010fd8fc83abcbec9e5c2340bf766997a485f11f2dae49d0d2dd4c","quote":{"exact":"first test case","prefix":"Water, H$_2$O, served as the ","suffix":", with a bending band near 1595 "},"rev":12,"span":[29,44],"store":"smithlab"}
fixtures/records/backend-docling.json
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{"code_license":{"spdx":"MIT"},"conditions":[],"format":"scienting-backend/1","name":"docling","processor":"local","stage":"read","version":"illustrative","weights":[{"license":{"spdx":"Apache-2.0"},"name":"layout model"}]}
fixtures/records/backend-examplevendor.json
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{"code_license":{"spdx":"Apache-2.0"},"conditions":[{"id":"revenue-cap","kind":"revenue-cap","usd":5000000},{"id":"no-competition","kind":"no-competition","vendor":"examplevendor"},{"allowed":["research","personal","education","startup"],"id":"purpose","kind":"purpose"}],"format":"scienting-backend/1","name":"examplevendor","processor":"local","stage":"read","version":"1.0","weights":[{"license":{"text":"A fictional weight license with conditions."},"name":"example weights"}]}
fixtures/records/datasets/ds-hale-ctct-scan/anchors.jsonl
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{"digitization":"qrqsy3x6bznxw","field":"r","point":0,"resource":"scan","row":"p0","series":"scan"}
{"digitization":"qrqsy3x6bznxw","field":"e","point":0,"resource":"scan","row":"p0","series":"scan"}
{"digitization":"qrqsy3x6bznxw","field":"r","point":1,"resource":"scan","row":"p1","series":"scan"}
{"digitization":"qrqsy3x6bznxw","field":"e","point":1,"resource":"scan","row":"p1","series":"scan"}
{"digitization":"qrqsy3x6bznxw","field":"r","point":2,"resource":"scan","row":"p2","series":"scan"}
{"digitization":"qrqsy3x6bznxw","field":"e","point":2,"resource":"scan","row":"p2","series":"scan"}
fixtures/records/datasets/ds-hale-ctct-scan/data.csv
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point,r,r_u,e,e_u
p0,1.45,0.01,3.10,0.05
p1,1.50,0.01,0.40,0.05
p2,1.55,0.01,2.80,0.05
1 point r r_u e e_u
2 p0 1.45 0.01 3.10 0.05
3 p1 1.50 0.01 0.40 0.05
4 p2 1.55 0.01 2.80 0.05
fixtures/records/datasets/ds-hale-ctct-scan/datapackage.json
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{"format":"scienting-dataset/1","id":"ds-hale-ctct-scan","name":"hale-ctct-scan","resources":[{"encoding":"utf-8","format":"csv","name":"scan","origin":{"anchors":"anchors.jsonl","digitization":"qrqsy3x6bznxw","kind":"digitized"},"path":"data.csv","schema":{"fields":[{"name":"point","type":"string"},{"name":"r","type":"number","uncertainty":{"field":"r_u","kind":"resolution"},"unit":"angstrom"},{"name":"r_u","type":"number","unit":"angstrom"},{"name":"e","type":"number","uncertainty":{"field":"e_u","kind":"resolution"},"unit":"kcal / mol"},{"name":"e_u","type":"number","unit":"kcal / mol"}],"primaryKey":"point"}}],"title":"Energy along the C–C stretch, read from Figure 1a"}
fixtures/records/digitization-confirmation.json
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{"at":"2026-10-11T20:00:00Z","by":"ana","doc":"hale2026harmonic","evidence":[{"kind":"crop","node":"b2wgyq2","sha256":"41859f0385275a8386eef230d92fc34a379549dd475f27396dc6e8a94ca0fc54"}],"format":"scienting-receipt/1","id":"zkebjgvzja0x1","level":"F3","nodes":[],"records":[["digitization","qrqsy3x6bznxw","9892eb87d908f81475fab42150e0bd84dbfbf0b2cbfe399fbcb39458791cac92"]],"rev":12,"root":"08849d6580a6c8eeec5d10026b2dbdf9ed64a40fe03cfe16849f846fbf49fabb","scope":"targeted:digitization","signature":{"key":"ana","scheme":"ed25519","value":"d32JjUZ3BrwnUl6iqglRXCMwcmnyPUPmVV6UMUtiZSWEANWbaRcit0Q5pDaD5c5MnTEV8Ur8gGl39Fre/cC4Cw=="}}
fixtures/records/digitization.json
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{"axes":[{"calibration":[{"at":[90,400],"value":"1.4"},{"at":[210,400],"value":"1.6"}],"check":{"at":[150,400],"value":"1.5"},"id":"x","label":{"figure_text":"nhk15ag","panel":"b2wgyq2"},"scale":"linear","unit":"angstrom"},{"calibration":[{"at":[80,400],"value":"0"},{"at":[80,280],"value":"4"}],"id":"y","label":{"figure_text":"nr4sby5","panel":"b2wgyq2"},"scale":"linear","unit":"kcal / mol"}],"confirmation":null,"dataset":"ds-hale-ctct-scan","doc":"smithlab/hale2026harmonic","format":"scienting-digitization/1","id":"qrqsy3x6bznxw","method":{"kind":"manual","tool":{"name":"hand","version":"0"}},"rev":12,"series":[{"id":"scan","kind":"points","legend":"scan","mark":{"color":"#285aa0","marker":"circle"},"values":[{"at":[110,360],"uncertainty":{"calibration":"0.01","marker":"0.02","resolution":"0.01","x":"0.01","y":"0.05"},"value":{"x":"1.45","y":"3.10"}},{"at":[150,330],"uncertainty":{"calibration":"0.01","marker":"0.02","resolution":"0.01","x":"0.01","y":"0.05"},"value":{"x":"1.50","y":"0.40"}},{"at":[190,300],"uncertainty":{"calibration":"0.01","marker":"0.02","resolution":"0.01","x":"0.01","y":"0.05"},"value":{"x":"1.55","y":"2.80"}}]}],"target":{"anchor":{"doc":"hale2026harmonic","format":"scienting-anchor/1","kind":"panel","node":"b2wgyq2","node_hash":"72ab6d60a594c2fdcb20bcc7142bd8e83d36046ef817c61d4240a93e5523e4aa","own_hash":"95cd7f9ab50d8386dc3086cf45a377c1d25c6c6111e3c422b69af10b6b1828c6","rev":12,"store":"smithlab"},"page_fp":"128d5f76c2c78ee9410c2ab4dda8abaee279db0caeec8a1cc019c3b1bd04ba60","region":[72,260,300,410],"witness":"23b6b2aaece9cb0a828a2f0265539500fcf34d5195bf720b934b8bfdeccb9834"},"verification":{"image":"41859f0385275a8386eef230d92fc34a379549dd475f27396dc6e8a94ca0fc54","max_residual":"0.9","residual":"0.4"}}
fixtures/records/draft-ids.jsonl
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{"id":"yc2kbpk","ord":0,"section":null,"text_hash":"d3c3de666d0290878de3949bc0e0ffcaef965c66d2b61e81a5e615e26a2997df"}
{"id":"chy7qty","ord":0,"section":"p687hqb","text_hash":"b605350bc00209520b7cd8f546322663356ba630708f71bbf30aead6b3dd608e"}
{"id":"s0wajte","ord":0,"section":"p687hqb","text_hash":"8f22f3f58beb618723a14dd8fee8caaeb5cef6b26f43d88a5ddb4ff42f86d63e"}
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{"id":"m13jn76","ord":2,"pinned":"energy-sentence","section":"p687hqb","text_hash":"3873ff52fe20b52be605c10c11e78b24bcabb05c8f725aeb4820c23428631509"}
fixtures/records/grades/anchor-hit.json
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{"exercise":"urn:scienting:annotation:smithlab/h6s98vg6qcyjp","format":"scienting-grade/1","items":[{"element":"element:0","feedback":"That is the cell.","max":"1","points":"1"}],"max":"1","score":"1","submission":"h4camq2b6fa0e"}
fixtures/records/grades/anchor-miss.json
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{"exercise":"urn:scienting:annotation:smithlab/h6s98vg6qcyjp","format":"scienting-grade/1","items":[{"element":"element:0","feedback":"Look in Table 1, row CT–CT.","max":"1","points":"0"}],"max":"1","score":"0","submission":"bjgg8jyxh42w9"}
fixtures/records/grades/check-overlap.json
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{"exercise":"urn:scienting:annotation:smithlab/y228zv031s285","format":"scienting-grade/1","items":[{"element":"verdict","feedback":"","max":"1","points":"1"},{"element":"element:0","feedback":"","max":"1","points":"1"}],"max":"2","score":"2","submission":"ncf5gq0x1xny5"}
fixtures/records/layer/annotations.jsonl
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