feat: rename to paperspec and add the website

- Rename manuspec to paperspec everywhere outside pixi.toml: prose, the
  tools, provenance tool names and the fixture key derivations, so every
  fixture and vector is rebuilt.
- Move the namespace addresses under the site, mirroring the repository:
  schema $id https://paperspec.scient.ing/schemas/<file>, the JSON-LD
  context https://paperspec.scient.ing/context/scienting-1.jsonld, and
  term IRIs https://paperspec.scient.ing/vocab#<term>. Format
  identifiers (scienting-*) and URNs (urn:scienting:) are unchanged.
- tools/site.py (standard library only) builds _site/: every file of the
  repository at its own path, each Markdown file rendered as a page with
  sidebar navigation, heading anchors matching the forge's, folder
  listings, a vocabulary page for the context's IRIs, a heading search
  and a 404 page; light and dark themes.
- check.py builds the site and checks that every Markdown file has a
  page, every internal link and fragment resolves, no Markdown is left
  unrendered, and every $id, the context address and the vocabulary IRIs
  are files of the site.
- deploy/: a Caddyfile with the media types and CORS the data needs, and
  a guide; .gitea/workflows/site.yml builds on main and publishes with
  rsync when the SITE_* secrets are set.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
This commit is contained in:
alexmandClaude committed 2026-10-14 21:27:21 -04:00
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{"answers":{"anchors":[{"doc":"hale2026harmonic","format":"scienting-anchor/1","kind":"sentence","node":"mbtjsqv","node_hash":"97c328c2e2efedd931292eeda806d3e4bad14d67cfcc324537c0d993068cfbfc","own_hash":"c1c6019d21c26d790304f7f7a080e93cf507d0e22ebeec6bf2e7df19a1820b3b","quote":{"exact":"most common description of covalent","prefix":"Harmonic bond terms remain the ","suffix":" stretching in classical force f"},"rev":12,"span":[31,66],"store":"smithlab"}],"verdict":"supports"},"doc":"smithlab/hale2026harmonic","exercise":"urn:scienting:annotation:smithlab/y228zv031s285","format":"scienting-submission/1","id":"ncf5gq0x1xny5","rev":12,"student":"s-7k2m","submitted_at":"2026-10-20T10:05:00Z"}
{"answers":{"anchors":[{"doc":"hale2026harmonic","format":"scienting-anchor/1","kind":"sentence","node":"mbtjsqv","node_hash":"97c328c2e2efedd931292eeda806d3e4bad14d67cfcc324537c0d993068cfbfc","own_hash":"c1c6019d21c26d790304f7f7a080e93cf507d0e22ebeec6bf2e7df19a1820b3b","quote":{"exact":"most common description of covalent","prefix":"Harmonic bond terms remain the ","suffix":" stretching in classical force f"},"rev":12,"span":[31,66],"store":"smithlab"}],"verdict":"supports"},"doc":"smithlab/hale2026harmonic","exercise":"urn:scienting:annotation:smithlab/shn6geqn0rhvs","format":"scienting-submission/1","id":"mk28stafpq7sp","rev":12,"student":"s-7k2m","submitted_at":"2026-10-20T10:05:00Z"}