feat: rename to paperspec and add the website

- Rename manuspec to paperspec everywhere outside pixi.toml: prose, the
  tools, provenance tool names and the fixture key derivations, so every
  fixture and vector is rebuilt.
- Move the namespace addresses under the site, mirroring the repository:
  schema $id https://paperspec.scient.ing/schemas/<file>, the JSON-LD
  context https://paperspec.scient.ing/context/scienting-1.jsonld, and
  term IRIs https://paperspec.scient.ing/vocab#<term>. Format
  identifiers (scienting-*) and URNs (urn:scienting:) are unchanged.
- tools/site.py (standard library only) builds _site/: every file of the
  repository at its own path, each Markdown file rendered as a page with
  sidebar navigation, heading anchors matching the forge's, folder
  listings, a vocabulary page for the context's IRIs, a heading search
  and a 404 page; light and dark themes.
- check.py builds the site and checks that every Markdown file has a
  page, every internal link and fragment resolves, no Markdown is left
  unrendered, and every $id, the context address and the vocabulary IRIs
  are files of the site.
- deploy/: a Caddyfile with the media types and CORS the data needs, and
  a guide; .gitea/workflows/site.yml builds on main and publishes with
  rsync when the SITE_* secrets are set.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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alexmandClaude committed 2026-10-14 21:27:21 -04:00
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{"applies_to":{"basis":["subscription"],"doi_prefixes":["10.5555/"]},"at":"2026-10-05T09:00:00Z","by":"ana","format":"scienting-policy/1","id":"g6r348z7ckp4q","project":"smithlab-charges","signature":{"key":"ana","scheme":"ed25519","value":"fQpa0K8NvBNatxnI/NWXXY2Cnkk5ibcXt3wEteM6K6EKhMB1cruazG9jpX7z2zbbxVvFyh6fgB9jJ1dItHfKDg=="},"statement":"Our institutional agreement covers internal AI use in our own cloud account for these papers (fictional).","uses":{"ai":{"internal/tenancy":true}},"valid_until":"2027-08-31T23:59:59Z"}
{"applies_to":{"basis":["subscription"],"doi_prefixes":["10.5555/"]},"at":"2026-10-05T09:00:00Z","by":"ana","format":"scienting-policy/1","id":"g6r348z7ckp4q","project":"smithlab-charges","signature":{"key":"ana","scheme":"ed25519","value":"FLg+kUV7cf0v+t8tGkYEtKdEazsqBb7X2LTqRHmMXH3h3ue/SXiegRBFxgIKff28elJSFv5EG7dK9LqvOs+PAA=="},"statement":"Our institutional agreement covers internal AI use in our own cloud account for these papers (fictional).","uses":{"ai":{"internal/tenancy":true}},"valid_until":"2027-08-31T23:59:59Z"}