feat: minted keys, VRF seeds, RFC 9162 proofs, history roots, tag URIs and a transparency log

Keys (spec/02 §2.4), the rule paperstack settled on:
- A work key is a Scholar-style citation key, a hyphen and the first four
  Crockford base32 characters of SHA-256("scienting-key/1:" + identity),
  where the identity is the first of doi, arxiv, isbn, pmid, pmcid and
  openalex in same_as, else the folded title, year and family name. A
  collision lengthens the later key by two characters; a key is minted
  once and never recomputed. A document key adds .si, .v<seq> or .<type>
  for versions other than the version of record.
- Every fixture key is now minted (hale2026harmonic-damb,
  okafor2025solvent-acth, writer2027fixed-ynr7.v3, tiny2026tiny-j4qm), so
  every node and record ID was re-minted and the docs rewritten to match.
  The validator checks the document key against the work key and version
  (doc.key.work) and the hash part against the identifier (doc.key.suffix).
  vectors/keys.jsonl pins the cases paperstack's tests pin.

Review:
- Spot-check seeds are ECVRF-EDWARDS25519-SHA512-TAI proofs (RFC 9381),
  implemented in tools/oracle/vrf.py in plain Python and reproduced
  against the RFC's Example 16; the sample ranks by the VRF output. The
  earlier Ed25519 seed could be ground by a dishonest checker.
- RFC 9162 inclusion and consistency proofs (crypto.inclusion_path,
  verify_inclusion, consistency_proof, verify_consistency) with
  scienting-proof/1, vectors/proofs.jsonl and two fixture records.
- document.json carries `history`, the root over the corrections, with
  the empty-tree hash for none (spec/11 §11.5, rule doc.history).
- A provisional transparency log (spec/23): log entries, signed-note
  checkpoints with key hashes as transparency logs share them, the rule
  that a logged revocation beats a self-asserted time, and vectors.
- Reserved signature schemes cose and ml-dsa-65 (spec/08 §8.4).

Identifiers and text:
- urn:scienting: becomes tag:scient.ing,2026: (RFC 4151), since the URN
  namespace was never registered.
- Unicode 16.0 is pinned for normalization and categories (spec/01 §1.4);
  the checker refuses another version.

Checking:
- check.py: keys, proofs, VRF and checkpoint vectors; the proof and
  checkpoint records; a check that every ID and hash the prose quotes
  exists in the fixtures or vectors; three more broken packages
  (history-wrong, key-suffix, key-work).
- stress.py: key, VRF, proof and checkpoint properties.
- Docs: a keys section in the concepts and FAQ, rationale entries for
  keys, VRF, proofs, tag URIs and the Unicode pin, a "Looking ahead"
  section, media-type registration and OCI distribution notes.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

vectors/README.md

@@ -53,7 +53,7 @@ The procedure is the same for every file:
    Find the inputs and the expected outputs of the case.
    The table below says which fields are which, and the chapter it links defines the rule.
    Only six files, `alignment`, `corrections`, `grading`, `resolve`, `rights` and `targets`, put the expected outputs under `expect`.
-   In the other fifteen the expected outputs are fields beside the inputs, such as `output`, `sha256`, `canonical` or `parsed`.
+   In the other nineteen the expected outputs are fields beside the inputs, such as `output`, `sha256`, `canonical` or `parsed`.
 4.
    Compute each output from the inputs with your implementation.
 5.
@@ -78,7 +78,7 @@ Some files change the procedure:
 Several files also mix more than one kind of case, told apart by their fields.
 `ids.jsonl` has minting cases and letter-first cases, `keyed.jsonl` and `signatures.jsonl` have a case for each derivation or record, `spotcheck.jsonl` has sample-size cases and one full sample, and `rights.jsonl` has stage checks (a `stage` field), backend checks (a `backend` field) and one combining case (neither).
 
-The reference checker in [tools/](../tools/README.md) runs all twenty-one files, together with the rest of the repository's checks:
+The reference checker in [tools/](../tools/README.md) runs all twenty-five files, together with the rest of the repository's checks:
 
 ```sh
 python3 tools/check.py --quick
@@ -123,18 +123,22 @@ The table below uses a few terms that the chapters define:
 | `rights.jsonl` | Stage checks with policies and expiry, the combining rule, and backend conditions. | [14](../spec/14-rights.md) |
 | `grading.jsonl` | Exercises, submissions and the grades they earn. | [19.4](../spec/19-exercises.md#194-grading) |
 | `targets.jsonl` | The target set of targeted F3 for the example paper under each digit rule, given the anchored nodes. | [8.10](../spec/08-fidelity.md#810-targeted-f3) |
+| `keys.jsonl` | Work keys: Scholar parts, identities, hash suffixes and document keys, with accented names, missing years and a collision. | [2.4](../spec/02-model.md#24-work-and-document-keys) |
+| `proofs.jsonl` | RFC 9162 inclusion paths for every item of small trees, consistency proofs for every prefix, the empty root, and the example paper's history. | [8.5](../spec/08-fidelity.md#85-merkle-roots), [11.5](../spec/11-corrections.md#115-the-history-root) |
+| `vrf.jsonl` | The VRF of spot-check seeds: RFC 9381's Example 16, two more inputs for its key, the example paper's seed, and proofs that must not verify (`beta` null). Bytes are hex. | [8.8](../spec/08-fidelity.md#88-spot-checks) |
+| `checkpoint.jsonl` | A transparency-log checkpoint: the entries, their root, the signed note and its signers. | [23](../spec/23-log.md) |
 
 Resolve those paths against the files in that package only.
 
 ## What the vectors prove, and what they do not
 
 The specification, and the vectors with it, are at version 0.1.0 ([0.3](../spec/00-introduction.md#03-format-identifiers-and-versions)).
-The specification has 29 formats: 18 are `candidate` and 11 are `provisional` in [registry/formats.json](../registry/formats.json).
+The specification has 32 formats: 19 are `candidate` and 13 are `provisional` in [registry/formats.json](../registry/formats.json).
 A candidate format changes only with a recorded reason and a new or changed vector ([22.5](../spec/22-conformance.md#225-stability)).
 
 A passing run shows one thing: for these inputs, your implementation computes the same values as the reference implementation in `tools/oracle/`.
 That code computed the expected outputs, and `pixi run build` regenerates them ([tools/](../tools/README.md)).
-The vectors hold 221 cases in all, some of them small: `hashes.jsonl` has one document, `alignment.jsonl` one pair of readings, `offsets.jsonl` and `signatures.jsonl` two cases each.
+The vectors hold 306 cases in all, some of them small: `hashes.jsonl` has one document, `alignment.jsonl` one pair of readings, `offsets.jsonl` and `signatures.jsonl` two cases each.
 
 The vectors do not show the following.
 
@@ -148,7 +152,7 @@ The vectors do not show the following.
   - `canonical-json.jsonl` has five cases, none for the repository's rule that a lone surrogate, `NaN` or an infinity has no canonical form.
   - `merkle.jsonl` has roots for 1, 2, 3, 4, 5 and 7 items.
     A receipt with no items is invalid ([8.5](../spec/08-fidelity.md#85-merkle-roots)), so no case has an empty list, although the RFCs it follows define a hash for an empty list ([RFC 6962](https://www.rfc-editor.org/rfc/rfc6962), [RFC 9162](https://www.rfc-editor.org/rfc/rfc9162)).
-  - Eleven formats are `provisional`, and only `grading.jsonl` carries any of their identifiers (exercise, submission and grade).
+  - Thirteen formats are `provisional`, and only `grading.jsonl` carries any of their identifiers (exercise, submission and grade).
     The chapters of the others define values that no vector pins, such as a dataset's content hash ([15](../spec/15-datasets.md)), the hash that confirms a digitization ([16](../spec/16-digitization.md)) and a checklist's content hash ([8.11](../spec/08-fidelity.md#811-checklists)).
     They are expected to change as implementations gain experience ([0.4](../spec/00-introduction.md#04-status)).
 - Reading a PDF: how text lines are extracted from a PDF is outside the specification; `fingerprints.jsonl` supplies the lines, so it tests the fingerprint function only ([7.1](../spec/07-geometry.md#71-page-fingerprints)).

vectors/addresses.jsonl

@@ -1,14 +1,17 @@
-{"address":"cornell1995second#k3m9q2a","id":"plain","parsed":{"key":"cornell1995second","node":"k3m9q2a","pin":null,"span":null,"store":null}}
-{"address":"cornell1995second#k3m9q2a@4f1a0c","id":"pinned","parsed":{"key":"cornell1995second","node":"k3m9q2a","pin":"4f1a0c","span":null,"store":null}}
-{"address":"cornell1995second#k3m9q2a@4f1a0c[12:57]","id":"span","parsed":{"key":"cornell1995second","node":"k3m9q2a","pin":"4f1a0c","span":[12,57],"store":null}}
-{"address":"smithlab/cornell1995second#k3m9q2a","id":"store","parsed":{"key":"cornell1995second","node":"k3m9q2a","pin":null,"span":null,"store":"smithlab"}}
-{"address":"dong2026machine.v2#k3m9q2a[0:0]","id":"span-no-pin","parsed":{"key":"dong2026machine.v2","node":"k3m9q2a","pin":null,"span":[0,0],"store":null}}
-{"address":"cornell1995second.si#m2x8p4d","id":"si","parsed":{"key":"cornell1995second.si","node":"m2x8p4d","pin":null,"span":null,"store":null}}
-{"address":"cornell1995second#b-p03-text-004","id":"alias","parsed":{"key":"cornell1995second","node":"b-p03-text-004","pin":null,"span":null,"store":null}}
-{"address":"cornell1995second#k3m9q2a[57:12]","id":"bad-reversed","parsed":null}
-{"address":"cornell1995second#k3m9q2a@4F1A0C","id":"bad-pin","parsed":null}
-{"address":"k#k3m9q2a[01:2]","id":"bad-leading-zero","parsed":null}
-{"address":"cornell1995second#","id":"bad-no-node","parsed":null}
-{"address":"Cornell1995#k3m9q2a","id":"bad-upper-key","parsed":null}
-{"address":"a/b/c#k3m9q2a","id":"bad-two-stores","parsed":null}
-{"address":"k#k3m9q2a@4f1a","id":"bad-pin-length","parsed":null}
+{"address":"cornell1995second-saqk#k3m9q2a","id":"plain","parsed":{"key":"cornell1995second-saqk","node":"k3m9q2a","pin":null,"span":null,"store":null}}
+{"address":"cornell1995second-saqk#k3m9q2a@4f1a0c","id":"pinned","parsed":{"key":"cornell1995second-saqk","node":"k3m9q2a","pin":"4f1a0c","span":null,"store":null}}
+{"address":"cornell1995second-saqk#k3m9q2a@4f1a0c[12:57]","id":"span","parsed":{"key":"cornell1995second-saqk","node":"k3m9q2a","pin":"4f1a0c","span":[12,57],"store":null}}
+{"address":"smithlab/cornell1995second-saqk#k3m9q2a","id":"store","parsed":{"key":"cornell1995second-saqk","node":"k3m9q2a","pin":null,"span":null,"store":"smithlab"}}
+{"address":"dong2026machine-1ard.v2#k3m9q2a[0:0]","id":"span-no-pin","parsed":{"key":"dong2026machine-1ard.v2","node":"k3m9q2a","pin":null,"span":[0,0],"store":null}}
+{"address":"cornell1995second-saqk.si#m2x8p4d","id":"si","parsed":{"key":"cornell1995second-saqk.si","node":"m2x8p4d","pin":null,"span":null,"store":null}}
+{"address":"cornell1995second-saqk#b-p03-text-004","id":"alias","parsed":{"key":"cornell1995second-saqk","node":"b-p03-text-004","pin":null,"span":null,"store":null}}
+{"address":"cornell1995second-saqk#k3m9q2a[57:12]","id":"bad-reversed","parsed":null}
+{"address":"cornell1995second-saqk#k3m9q2a@4F1A0C","id":"bad-pin","parsed":null}
+{"address":"k-0000#k3m9q2a[01:2]","id":"bad-leading-zero","parsed":null}
+{"address":"cornell1995second-saqk#","id":"bad-no-node","parsed":null}
+{"address":"Cornell1995-k3f9#k3m9q2a","id":"bad-upper-key","parsed":null}
+{"address":"a/b/c-0000#k3m9q2a","id":"bad-two-stores","parsed":null}
+{"address":"k-0000#k3m9q2a@4f1a","id":"bad-pin-length","parsed":null}
+{"address":"cornell1995second#k3m9q2a","id":"bad-no-hash","parsed":null}
+{"address":"cornell1995second-k3fi#k3m9q2a","id":"bad-hash-alphabet","parsed":null}
+{"address":"cornell1995second-k3f#k3m9q2a","id":"bad-short-hash","parsed":null}

vectors/checkpoint.jsonl

@@ -0,0 +1 @@
+{"entries":[["receipt","npc15pn6675z5","37b3025b54c6397e5f8d400912b5788cd6ce203059cd9143e7d521c2cdbf2917"],["receipt","y2zw8ctg5s8dp","ae17f8866a05ca1b671d96b7758984e11ac694acd6743835f107cb513c7cc600"],["receipt","mvjmb94nz7rdh","a4dca8b492bf3e1b190f22e09de77713523e345526fd1b01c1186d0fe80d1cf4"],["receipt","q465jpwz8afhe","39218b2b73e853e2e66d8d4ce68cf7e155ca001f05ee4da5942a8d9b63b216bc"],["revocation","pcbhtpwvysgq6","9062e3ab737ecc2e6d487d2076ee27f764be60f06ad01f1ad103d708d466e56a"],["receipt","gx2s84z9jf9xv","5ee8b2827d327a7bbcacb08fd19b9523fad83ebf6c29350d5ce7ca30bf5ce388"],["receipt","mg18668nzxvap","4c80506322bfeed5649cfab303959e4ccf0aa0e594995ee6fd5ad59f9d3ee6a7"],["receipt","yt70fcc3qm0xb","2ad1c0f63077a03ab1cce01e6235734577d0b072b90ebab2f7db7fd481ccee2c"],["roster","smithlab","c4d1edc00070112de84a0b57ba6d16959c0a50b5b2b85249f7d21e390b742988"]],"id":"smithlab","note":"scient.ing/log/smithlab\n9\nSsjq+QpCQnva7PfGTdEv1jcArj1AORP4mYfN+rLz268=\n\n— ana dBv7wspe8vvwH61eTw3SQfa3udWjBNSV0xVCxfoLhiuei/SytzSotCBOK8CvPK3scJ8xHEAnUROdAmyXAh65xchq2g0=\n","origin":"scient.ing/log/smithlab","root":"4ac8eaf90a42427bdaecf7c64dd12fd63700ae3d403913f89987cdfab2f3dbaf","signers":["ana"]}

vectors/corrections.jsonl

@@ -1,28 +1,28 @@
-{"before":{"ids":[],"nodes":[{"align_key":"b3108c22ec836d883e5116f7ed8546fa75390eb4aa960d78f2936115f69b6826","id":"ayan7gn","kind":"document","match_hash":"b6a4e12f700a6214bf02c9a437559e82fccdbecea7b575fa438a7d2e8c33071a","node_hash":"5bca682ef032725a940cf6745051126022a1ad6bd465bb3c051dae35ddfbbd17","ord":0,"own_hash":"34444fe0e6bdbf3927a579fe3286859d204ea0882a381b7769ffd4905551d24f","parent":null,"text_hash":"bd2abc746d51cf52d57a18632383245d585e29e265426967894eed99bc937561"},{"align_key":"caf6aee3882b3890996037e35d0ffdfe30b5e66653d45321d7ea0fa9135f1ee9","attrs":{"level":1},"id":"mzkksmc","kind":"section","label":"1","match_hash":"5a96c01f314c4d8a22fd5e105bebef45df4301886cccbc2538ecefddfcb1d405","node_hash":"83b33c64f1aab4df2f6bc32ee36aa4e5f77410681e2dea8289f64d569fdafbcb","ord":0,"own_hash":"65da097b48f8237e8d171bfbd0053ff0e3795c0532d5522d23a92b53430956f4","parent":"ayan7gn","text_hash":"7a97628fe9643c0fca3614a077e2e631c3fee81d3733ba1564292df65a294573"},{"align_key":"c099142bc3186ded72786ba27e9ea6d2da240fb9fd3fe79b479ecf8e734b2850","id":"gtjh3x4","kind":"heading","match_hash":"219c4a6c86a716e99d5dc9611b61e584deb11b57e972d87d4b773387ebc3cadd","node_hash":"a3c82ab1e44bf4cffa1a59507f8bddc39a1ad191321ee803d0d60d96609a44c7","ord":0,"own_hash":"e813ff86a8920cef741e548eb5df545774b520d2fadbdda6e2b872a6729b9d26","parent":"mzkksmc","text_hash":"219c4a6c86a716e99d5dc9611b61e584deb11b57e972d87d4b773387ebc3cadd"},{"align_key":"c099142bc3186ded72786ba27e9ea6d2da240fb9fd3fe79b479ecf8e734b2850","content":[{"kind":"text","text":"Results"}],"fidelity":"F2","id":"fvafy61","kind":"sentence","match_hash":"219c4a6c86a716e99d5dc9611b61e584deb11b57e972d87d4b773387ebc3cadd","node_hash":"293fc03ff4e39d7532467e4417ffcdb15f470f0bd3658dc1c021645ad53c9bef","ord":0,"own_hash":"c55f401232b19ff1133d77eac6c72868975064f177fc2d31ab8a181303c30599","parent":"gtjh3x4","text_hash":"219c4a6c86a716e99d5dc9611b61e584deb11b57e972d87d4b773387ebc3cadd"},{"align_key":"610c235321e38145abff21e31eaab303d85a6ce0d1b9340a599dc821a04922f6","id":"gj83ag8","kind":"paragraph","match_hash":"bcb4902ec69f2a7a724384f561ee9aa0e214c824c5882c1ad92777bee680aad4","node_hash":"a5b991f3f9d3119d4b9f667004147da0c216eec55b8e15c1e90f4916486fd345","ord":1,"own_hash":"494e069be36a18ecaabf5a63be7c31617ade7a5460218ca83a2de3d8d8f964e0","parent":"mzkksmc","text_hash":"f589ee914c46c4aea7ce2de49d925c433c914121f576b81a3eab692f17f179a3"},{"align_key":"8f21603c39df123eb8680362184274aac9bdf1dbd485b3bba230960179071c95","content":[{"kind":"text","text":"The 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vectors/spotcheck.jsonl

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vectors/targets.jsonl

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vectors/vrf.jsonl

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