Files
paperspec/spec
alexmandClaude ea0a7efa78 feat: zipped packages, target set, checklists, audit fixes and a stress test
Features for the next six months (accessible HTML export, paperpack and
Lode on packages, the personal bundle):

- Zipped packages: the oracle writes and reads `.sct.zip` archives under
  the rules of spec/12 §12.2; validate.py and load.py accept them; a
  byte-identical zip of the tiny package joins the fixtures, and two
  broken archives (traversal, symbolic link) join fixtures/invalid.
- The target set of targeted F3 (spec/08 §8.10) is computed by the
  oracle and pinned by vectors/targets.jsonl under each digit rule; the
  rule now covers cells as well as sentences and the leaves of anchored
  containers, and defines a node's section.
- scienting-checklist/1 (provisional): a conformance check of an export,
  covered by a receipt as ["checklist", id, hash] (spec/08 §8.11), with a
  WCAG 2.1 AA fixture and its receipt.
- QA reports are signed like receipts (spec/08 §8.9).
- A `description` annotation body with role alt or long, so an
  accessible export can find a confirmed figure description; the layer
  fixture carries one, and the store's body-kind constraint allows it.
- scienting-spot-check/1, the seed payload, is registered with a schema.
- exercise, submission and grade are provisional until a course has
  used them.

Audit fixes, each with a vector or a broken package where one was
missing:

- Folder packages: symbolic links are refused on validate and load,
  manifest paths must not collide under case folding, listed files are
  matched by exact name, files are hashed in chunks under a size limit.
- Files are compared byte for byte, so CR LF, a byte order mark, NaN,
  a lone surrogate or invalid UTF-8 is refused instead of translated;
  integers beyond 2^53 are read as doubles, as canonical JSON writes them.
- Receipts: signature.key must equal by and the key must be valid when
  signed; a qa receipt's nodes must be the sample at the original's
  hashes, its scope must name qa.of, its errors must be sampled nodes;
  statuses are computed once, iteratively, so chains of spot-checks
  hundreds deep settle; Base64 and manifest shape errors become refusals
  instead of tracebacks; counts and the fidelity of roster-less packages
  are recomputed.
- The gate enforces rule 11 of spec/11 §11.4: changed nodes are
  validated against the node schema and the references between nodes
  are checked, so a set to a bad value, an insert with unknown
  properties or a delete of a referenced header cell is refused; a
  relabel to null drops the label; a reclassify drops foreign
  attributes; a split strips whitespace across runs; ids.jsonl order
  follows spec/04 §4.4 in every state; a move after itself is refused.
- Anchors: the relabel rule requires that nothing else changed below the
  node; an alias chain ending in a deletion no longer crashes resolve.
- Notation: a script after an empty group applies to the previous atom
  ({}^{14}C); letters are defined by Unicode block in spec/05 §5.4 and
  the oracle; \left) is complex.
- Page fingerprints delete whitespace before folding, so "10 -20" and
  "10-20" fold alike (spec/07 §7.1).
- Grades are summed with exact decimals; the reviewer error bound is
  computed with integer arithmetic.
- receipts and revocations are keyed by (doc_key, id) in SQL, since one
  revocation may be carried by several packages.

Checking:

- tools/stress.py: seeded randomized property tests over canonical JSON,
  normalization, notation, random correction walks, anchor resolution,
  Merkle roots, spot-check samples, error bounds, fingerprints, mutated
  archives and packages, rights and spot-check chains; CI runs it.
- check.py verifies every count and version the prose states against
  the repository, the zipped fixture and crafted archives, the checklist
  coverage, and nine more broken packages.
- CONTRIBUTING.md gains a release checklist.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
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The manuspec specification

This specification states exactly what each manuspec file holds and how every value in it is computed. The schemas, SQL, JSON-LD context, registries, vectors and fixtures are normative too, and each chapter says which of them it relies on. A chapter and a vector that disagree signal a bug, so please report it in the repository, https://git.scient.ing/infra/manuspec.

Two readers will get the most from it: implementers who build a reader, writer, converter or checker, and experts who want the precise rules. Newcomers should start with the guides, which explain what the formats are for. This text assumes you know why and tells you how.

Reading paths

Find the row for the job you are doing and read its chapters after those in the first row. Chapter numbers are those in the table below.

If you are writing Read
Anything at all 0, 1, 3, 4 and 5: introduction, conventions, nodes, identity and the content values.
A reader of packages Then 2, 6, 7 and 12: the model, anchors, geometry and the package.
A converter Then 9, 10 and 11: figures and tables, references, and corrections with the gate.
A store or a server Then 8, 13 and 14: receipts, the database form, and rights.
A writer or reader of annotation, teaching or data files Then 15 to 21.
A validator Chapter 22, with registry/rules.json.

Chapters

Chapter Subject
0. Introduction Scope, conformance, versions and status, and how the repository is arranged
1. Shared conventions Canonical JSON, numbers, hashes, normalization, offsets, times, determinism, IDs, keys, files and prose
2. Works, versions, witnesses and documents The four objects; document.json and witnesses.json
3. Nodes Nodes, their kinds and children, content, attributes, inline runs and the plain projection
4. Identity Minting IDs, permanence, retirement, aliases, ids.jsonl, store-qualified names and record IDs
5. Content values The five content values, the projections, alignment, suspects, keyed hashes and the metadata hash
6. Addresses and anchors Addresses, anchors and the five resolutions, with drift
7. Geometry Page fingerprints, stamp rules, pages.jsonl and locations.jsonl
8. Fidelity, receipts and spot-checks Fidelity levels, receipts, signatures, Merkle roots, the roster, revocations, spot-checks and error bounds
9. Figures, tables and equations Figures, panels, tables, cells and equations
10. References and citations Reference nodes, references.jsonl and its resolutions, and sentence-level citations
11. Corrections Corrections and the gate
12. The package The files of a package, paths, manifest, provenance, text policies and assets
13. The database form and the bundle The database form and the SQLite bundle
14. Rights Rights records, policies, stages and backends
15. Datasets Frictionless Data Packages with units, uncertainty and origin; anchors.jsonl; content hash
16. Digitization records How values were read off a figure panel: target, axes, series, method, verification and confirmation
17. Views Vega-Lite specifications that pin their data, and optional computations
18. Layers and annotations Layers and annotations
19. Exercises, submissions and grades Exercises, submissions and grades
20. Projects Members and roles, documents, reading paths, held layers, datasets, views and drafts, and settings
21. Drafts Drafts: snapshots and sentence-ID sidecars
22. Conformance Conformance, the suite and the rule catalog