paperspec/spec/18-layers.md

18. Layers and annotations

Everything people and models add to a document is an annotation, and annotations are grouped in layers. scienting-layer/1 is the W3C Web Annotation Data Model with the anchor as a selector, so any Web Annotation tool can read it. The JSON-LD context is context/scienting-1.jsonld, published at https://paperspec.scient.ing/context/scienting-1.jsonld.

18.1 One rule decides what is a claim and what is a layer

If a statement is true independently of this paper, it belongs in a claim store as a claim, where it is checked and leveled. If it is about reading this paper, it belongs in a layer, where it is attributed and signed but not checked.

18.2 The layer

A layer is a folder with layer.json and annotations.jsonl. layer.json is an AnnotationCollection with the two contexts, format, an id of the form tag:scient.ing,2026:layer:<store>/<record id>, a label, a purpose, an audience (novice, student, expert or mixed), a visibility (private, team or public), a license (CC BY 4.0 by default when public), its creator, created, its project, the docs it annotates and its total. A reader turns layers on and off, and the audience dial picks the level of glosses.

18.3 The annotation

Each line of annotations.jsonl is a W3C Annotation:

Property	Holds
@context	["http://www.w3.org/ns/anno.jsonld", "https://paperspec.scient.ing/context/scienting-1.jsonld"].
id	tag:scient.ing,2026:annotation:<store>/<record id> (4.6).
type, layer	Annotation, and the layer's ID.
motivation	A W3C motivation: commenting, describing, linking, questioning, assessing, replying and the others.
creator, created, modified	An agent {id, type, name}, with type Person or Software, and times.
body	One body (18.4).
target	A SpecificResource whose source is tag:scient.ing,2026:doc:<store>/<key> and whose selector lists an AnchorSelector holding a scienting-anchor/1, optionally followed by a W3C TextQuoteSelector for tools that do not know ours; or, for a reply, a SpecificResource whose source is another annotation.
status	proposed, confirmed, rejected or withdrawn. A model's annotation is proposed until a person confirms it.
receipt	For a confirmed annotation, the receipt that covers it.

The TextQuoteSelector, when present, repeats the anchor quote's exact, prefix and suffix, with an empty string for a prefix or suffix the quote lacks. It is present only when the anchor's quote is plain text; an anchor whose quote is hashed or keyed (6.3) has none, so the fallback never shows text the anchor withholds.

An annotation's content hash is SHA-256 of the canonical JSON of the annotation without status, receipt and modified. A confirmed annotation is covered by its confirmer's receipt, which lists ["annotation", <record id>, <content hash>]. Replies are annotations that target annotations, so discussions are threads anchored to sentences.

18.4 Bodies

kind	W3C type	Adds	Says
gloss	TextualBody	audience	An explanation at novice, student or expert level.
claim-link	SpecificResource	source (lode:<tag>), pin, role	That the span states, uses or disputes a claim.
symbol	SpecificResource	source, pin, symbol	That this occurrence of a symbol is a symbol claim.
comment	TextualBody	category	A remark, opinion or interpretation.
caveat	TextualBody	category	A warning a reader should see.
question	TextualBody	for, category	A question for a reader, a group or the authors.
exercise	TextualBody	exercise	A task with a key and a rule (19).
citation-context	TextualBody	reference, verdict, reason	Why a sentence cites a reference, and whether it supports it.
prerequisite	SpecificResource	source	What to read or know first.
crosslink	SpecificResource	source, selector	That the span corresponds to a span in another document.
translation	TextualBody	language	The span in another language.
description	TextualBody	role	A description of a figure, panel or table for readers who cannot see it: alt, a short text equivalent, or long, a full description.
generated	TextualBody	generator	Text a model wrote about the span; never mistaken for source. generator is {model, run} as a correction's model author is (11.2).

A textual body has a value, and optionally a format (text/plain or text/markdown) and a language.

A comment, caveat or question body MAY carry a category, which says what it is about, from a fixed list:

category	Says
comment	A general remark.
context	Background, related work, or what a reader should know to follow the span.
critique	A flaw in the method, the analysis or the argument.
question	A question.
correction	An error of fact, number, citation or reference in the paper.
feedback	A suggestion addressed to the authors.
resource	Data, code or a related paper.

A producer that supports categories SHOULD set one on every comment, caveat and question; the property is optional only so that layers written before it stay valid. The category is independent of the kind, so a caveat may be a correction and a question a critique. A correction category says that a reader found an error in the paper; correcting the document's reading of it is a correction of 11. The store's annotations table keeps the category beside the body's kind (13.4). Nothing a model writes is ever stored as source text. A model may propose a description, and like any annotation it stays proposed until a person confirms it; an accessible export uses confirmed descriptions only, and a figure with none has no description. Other text a model writes about a span, such as a summary, is a generated annotation, which names its generator. fixtures/records/layer/ holds a layer with one annotation of each common kind, each comment, caveat and question with its category, and the receipt that confirms some of them.