Files
paperspec/spec/10-references.md
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alexmandClaude 8b5ee87275 feat: comment categories; emend, relink and resolve corrections
scienting-layer/1: an optional, fixed category on comment, caveat and
question bodies (comment, context, critique, question, correction,
feedback, resource).

Corrections: emend fixes the authors' own slip and keeps what was printed
(a run's printed), never lowering fidelity or a witness match; relink sets
or removes what a citation names; resolve sets a reference's resolution.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_017R7sgDNvUGWY2zFPCq2JH6
2026-10-17 06:17:10 -04:00

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Markdown

# 10. References and citations
Each reference is a `reference` node holding its printed runs, exactly as printed, and its printed number as its `label`.
`references.jsonl` holds, for each reference node in document order, a record with `node`, `label`, an optional parsed `csl` record in CSL-JSON, and its `resolution`:
| Resolution | Means |
| --- | --- |
| `{type: "doi", doi}` | The reference names a DOI. |
| `{type: "document", doc}` | It names a document in the same store, by key. |
| `{type: "none"}` | Nothing yet. |
A reference without a record has the resolution `none`.
A `resolve` correction sets a reference's resolution, and its record keeps the one before ([11.7](11-corrections.md#117-citations-and-references)).
Every `cite` run links a sentence to one or more references.
A `relink` correction changes the references a run names, makes a text run a cite run, or makes a cite run text again, without changing its text ([11.7](11-corrections.md#117-citations-and-references)).
The citation graph is therefore sentence-level: for any reference, the format gives every sentence that cites it, which is the citation's context.
The database derives a `citations` table from the runs ([13](13-database.md)).
An article's references and its Supporting Information's are separate documents' references and never mix.